There is the correct way to do this.
Number 1 you should see where the runner were.
You use a piece of paper to set it up,, if you adjust so that the top is too tight it will force open the bottom of the glass and if the top of the runner is too tight at the top of the door the glass will run out as it goes up.
I suggest that you take a bit of paper go to the other side and slide it around the glass and seal feeling the tightness as you go, then set up the other side the same. The trick is to have a balanced pressure all round,, if any one part is too tight it will mak a gap somewhere else.
I once again stress that you can see the marks where they have been for the best part of the cars life